BtaEX6038398 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17706870-17708940:+
Coord C1 exon
chr7:17706870-17706933
Coord A exon
chr7:17708544-17708593
Coord C2 exon
chr7:17708859-17708940
Length
50 bp
Sequences
Splice sites
3' ss Seq
CACCCCTCATTTCCCTGCAGAAA
3' ss Score
10.33
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CGGAAGCGGCGGCGCCCCTAGGGAAAGATGGCGCCCTCGGGGCTGAAGGCGGTGGTAGGAGAAA
Seq A exon
AAATTTTGAGCGGAGTCATTCGGAGCGTCAAGAAAGATGGAGAGTGGAAG
Seq C2 exon
GTGCTCATCATGGACCACCCGAGCATGCGCATCTTGTCGTCCTGCTGCAAGATGTCAGACATCTTGGCTGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0099518=Sec1=PU(0.2=5.9)
C2:
PF0099518=Sec1=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGAAAGATGGCGCCCTC
R:
GATGCCCTCAGCCAAGATGTC
Band lengths:
125-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]