HsaEX0067691 @ hg19
Exon Skipping
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53113727-53114281:+
Coord C1 exon
chrX:53113727-53113804
Coord A exon
chrX:53113937-53114048
Coord C2 exon
chrX:53114136-53114281
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCACCCCCACCTGGAGCAGGTA
3' ss Score
3.08
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAG
Seq A exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACTAACCCCTACTTCACAAACATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq C2 exon
GCCGGCTGGTGTCTCACTCAACCCCAATCCGCTGGCACCGGGGCCAGGAACCCCAGGCCCGTCGTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGGTTCTCAAACCATAGCCTCCCAGAGGCTGACAGGATTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
PF0095613=NAP=FE(19.8=100)
C2:
PF0095613=NAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCACCCCAGAATTTCA
R:
CAGCAATCCTGTCAGCCTCTG
Band lengths:
220-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)