HsaEX0067691 @ hg38
Exon Skipping
Gene
ENSG00000184205 | TSPYL2
Description
TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]
Coordinates
chrX:53084545-53085099:+
Coord C1 exon
chrX:53084545-53084622
Coord A exon
chrX:53084755-53084866
Coord C2 exon
chrX:53084954-53085099
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCACCCCCACCTGGAGCAGGTA
3' ss Score
3.08
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAG
Seq A exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACTAACCCCTACTTCACAAACATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq C2 exon
GCCGGCTGGTGTCTCACTCAACCCCAATCCGCTGGCACCGGGGCCAGGAACCCCAGGCCCGTCGTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGGTTCTCAAACCATAGCCTCCCAGAGGCTGACAGGATTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-'3-7,'3-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
PF0095613=NAP=FE(19.8=100)
C2:
PF0095613=NAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCACCCCAGAATTTCA
R:
CAGCAATCCTGTCAGCCTCTG
Band lengths:
220-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development