MmuEX7001713 @ mm10
Exon Skipping
Gene
ENSMUSG00000041096 | Tspyl2
Description
TSPY-like 2 [Source:MGI Symbol;Acc:MGI:106244]
Coordinates
chrX:152339862-152340380:-
Coord C1 exon
chrX:152340303-152340380
Coord A exon
chrX:152340086-152340197
Coord C2 exon
chrX:152339862-152340007
Length
112 bp
Sequences
Splice sites
3' ss Seq
TATTACCCCACCCTGAGCAGGTA
3' ss Score
4.66
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATCTTGATCAACCAACGTGACAGAGACATTTTCCGCTACTTGACCAATCTTCAG
Seq A exon
GTACAGGACCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACAAACCCATACTTTACAAACATGGTGATCGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq C2 exon
GCCGGTTGGTGTCTCATTCTACCCCAATACGTTGGCACCGGGGCCAGGAACCCCAGGCCTATAATCGCAGGAGCCATGACACCAGAGAAAGCTTCTTCAACTGGTTTTCCAATCACAGCCTCCCAGAAGCTGACAGAATTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041096-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(13.0=45.0)
A:
PF0095613=NAP=FE(19.8=100)
C2:
PF0095613=NAP=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCACCCCAGAATTTCA
R:
AGCAATTCTGTCAGCTTCTGGG
Band lengths:
219-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types