RnoEX0094508 @ rn6
Exon Skipping
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22411165-22411685:-
Coord C1 exon
chrX:22411608-22411685
Coord A exon
chrX:22411389-22411500
Coord C2 exon
chrX:22411165-22411310
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATTACCCCCACCCTGAGCAGGTA
3' ss Score
5.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATCTTGATCAACCAACGCGATGAAGACATCTTCCGCTACTTGACCAATCTTCAG
Seq A exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACAAACCCATACTTCACAAACATGGTGATCGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq C2 exon
GTCGGTTGGTGTCTCATTCTACCCCAATACGTTGGCATCGGGGACAGGAACCCCAGGTCTACAATCGCAGGAGCCACGACACCAGAGAAAGCTTCTTCAACTGGTTTTCCAACCACAGCCTCCCAGAAGCTGACAGAATTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(13.4=100)
A:
PF0095613=NAP=FE(19.9=100)
C2:
PF0095613=NAP=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCACCCCAGAATTTCA
R:
AGCAATTCTGTCAGCTTCTGGG
Band lengths:
219-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]