HsaEX0068787 @ hg19
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76152219-76165909:+
Coord C1 exon
chr15:76152219-76152323
Coord A exon
chr15:76161292-76161351
Coord C2 exon
chr15:76165769-76165909
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGATTCTTTCTCTGTTTCAGAAT
3' ss Score
10.35
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
Seq A exon
AATGGGACAACAGAAGAAGTGACTTCAGAAGAAGAGGAAGAAGAAGAAGAGATGGCTGAA
Seq C2 exon
GATATAGAAGACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'4-6,'4-4,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=1.000 C2=0.592
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(18.1=60.0)
A:
PF0577317=RWD=FE(15.4=100)
C2:
PF0577317=RWD=PD(6.5=17.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCTAAGCACCTGGATGT
R:
TTCCTTCATCCTCTGACTTTTTCCC
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)