GgaEX1061646 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3019508-3021812:-
Coord C1 exon
chr10:3021708-3021812
Coord A exon
chr10:3020189-3020245
Coord C2 exon
chr10:3019508-3019648
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATCTCACTGTTACATTGCAGAAT
3' ss Score
8.07
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
CTTCTCCAGCAACTGAAGCGATTAATATGTGACCTCTGCAGATTGTATAATCTTCCTCAGCATCCAGATGTTGAAATGTTAGATCAGCCATTACCAGCTGGACAG
Seq A exon
AATGGAACAACGGAAGAAGTTACATCGGAGGAGGAGGAGGAGGAAGATATGGGTGAA
Seq C2 exon
GACATTGAAGATCTGGATCACTATGATATGAAGGAGGAGGAACCAGTTGACGGGAAGAAATCCGAGGATGAAGGCATTGAAAAAGAGAACCTTGCAATCTTAGAAAAAATCAGAAAAAATCAAAGGCAAGATCACTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=1.000 C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATTAATATGTGACCTCTGCA
R:
TCTTCCCGTCAACTGGTTCCT
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]