DreEX0082844 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:29007008-29007587:-
Coord C1 exon
chr25:29007465-29007587
Coord A exon
chr25:29007313-29007369
Coord C2 exon
chr25:29007008-29007225
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTTGTTCTTCCCAGCAT
3' ss Score
7.67
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
CTCTTACAGCAGCTGAAAAGGCTGATCTGTGATTTATGCCGACTCTATAACCTGCCCCAGCATCCTGATGTGGAGATGCTGGATCAGCCGCTTCCTGCTGGACCCATCAGTAATGATAAGAAG
Seq A exon
CATGGAACAACAGACGAAGTGACATCAGAAGAAGAGGAGGAAGAGGAAATGGCAGAG
Seq C2 exon
GATATTGAAGATCTAGACCACTATGAGATGAAAGAGGAACCAGTGGATGGGAAAAAGTCGGAGGACGATGGCATAGAGAAGGAGAACCTGGCCATTCTGGAGAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACGTAAGTGTCCATTCGGTAAGGTACCTTTTTATACAATTTGGGGTTGGGTGGTTCATTTTCGAATAAGAAAGCCAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=1.000 C2=0.405
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(15.2=39.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGTGGAGATGCTGGA
R:
TCTCTATGCCATCGTCCTCCG
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]