RnoEX0095810 @ rn6
Exon Skipping
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59728960-59740765:+
Coord C1 exon
chr8:59728960-59729064
Coord A exon
chr8:59736470-59736526
Coord C2 exon
chr8:59740625-59740765
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACATTCTTTCTCTGTTTCAGAAT
3' ss Score
12.5
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
CTCCGTCAGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
Seq A exon
AATGGCACAACGGAGGAAGTAACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
Seq C2 exon
GATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529-'12-10,'12-9,15-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=1.000 C2=0.553
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(14.8=48.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCAGCAATTGAAGTGGT
R:
GGCTCTTCTTCCTTCATCTCGT
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]