BtaEX6077447 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31660369-31674756:+
Coord C1 exon
chr21:31660369-31660470
Coord A exon
chr21:31671272-31671328
Coord C2 exon
chr21:31674616-31674756
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAAACTTTTTTTCTTTTCAGAAT
3' ss Score
10.21
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GAATCTTATCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGATCCAAACCTGACTTCAGTTCTGGAACGTCTCGAAGACACTAAGAACAACAATTCG
Seq A exon
AATGGGACAACAGAAGAGGTGACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
Seq C2 exon
GATATAGAAGACTTGGATCATTATGAGATGAAGGAAGAAGAGCCCATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024-'8-11,'8-10,14-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=1.000 C2=0.660
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(25.4=100)
A:
PF0577317=RWD=FE(13.8=100)
C2:
PF0577317=RWD=PD(10.0=27.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACTCTGATGATCCAAACC
R:
CCTTCATCCTCTGACTTTTTCCCA
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]