HsaEX0072603 @ hg38
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134532834-134565421:-
Coord C1 exon
chr8:134565333-134565421
Coord A exon
chr8:134564987-134565152
Coord C2 exon
chr8:134532834-134532972
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTTGTGCTCTCTCGTTCCAGAAG
3' ss Score
10.64
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGCAGTTTAAGTGCACGGTGTGTGACTACACAGCGGCCCAGAAGCCACAGCTGCTGCGGCACATGGAACAGCATGTCTCCTTCAAG
Seq A exon
AAGCGTAGCATTGCTCTGTAATTTGGAAACCAAGTCAAAGATGTGTAAGAGGATGCAGACAGAAGAAAAGGCACGATCTTTGCATAAAAGCACTGGAGTGATTTAGAGGAAGGCTTGCAGGCTTTAGGGACACGTATTTTTGCTTTCAGATCCTGGATTGCTGCAG
Seq C2 exon
CCTTTCCGCTGTGCCCATTGCCATTACTCCTGCAACATATCTGGCTCTCTGAAGCGGCACTACAACAGGAAGCACCCTAATGAGGAGTATGCCAACGTGGGCACCGGGGAGCTGGCAGCGGAGGTGCTCATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-11/19=10-15
Average complexity
S
Mappability confidence:
86%=100=90%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=76.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTTAAGTGCACGGTGT
R:
CTGGATGAGCACCTCCGCTG
Band lengths:
221-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development