HsaEX1044624 @ hg38
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134509619-134535703:-
Coord C1 exon
chr8:134535603-134535703
Coord A exon
chr8:134533686-134533785
Coord C2 exon
chr8:134509619-134509749
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCAGGTGCTTCTTTCCCCAGCCC
3' ss Score
5.97
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTCCTTTTGTTTAGTAAATGCTGTGGGCCAAACTCCAAGGATTCCTTACCCAGGGACTTAATGTAGAAACACAGCACATGCGGTGCGGCACAAAGCATCCG
Seq A exon
CCCCACTATTTATGCAGCCTCCGAAGCATTGTGCAAGAGGAAAGGCAGGACTGCATGACTCGTTTGTGGCCTCATCCCGAAAGTGTCTTGTCTTGACCAG
Seq C2 exon
GCGACCGACTGGACCCCACGGCCGTGAACATCCTGCAGCAGATCATTGAGCTGGGCGCCGAGACCCATGACGCCACTGCCCTTGCCTCGGTGGTTGCCATGGCACCAGGGACGGTGACTGTGGTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-14/19=13-18
Average complexity
C3
Mappability confidence:
80%=100=86%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.163
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTAGTAAATGCTGTGGGCCA
R:
CTGCTTAACCACAGTCACCGT
Band lengths:
226-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains