HsaEX1044623 @ hg38
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134532834-134565152:-
Coord C1 exon
chr8:134564987-134565152
Coord A exon
chr8:134535603-134535703
Coord C2 exon
chr8:134532834-134532972
Length
101 bp
Sequences
Splice sites
3' ss Seq
AAATTTTGCCTTTGTTCCAGGTC
3' ss Score
8.83
5' ss Seq
CCGGTAACC
5' ss Score
5.28
Exon sequences
Seq C1 exon
AAGCGTAGCATTGCTCTGTAATTTGGAAACCAAGTCAAAGATGTGTAAGAGGATGCAGACAGAAGAAAAGGCACGATCTTTGCATAAAAGCACTGGAGTGATTTAGAGGAAGGCTTGCAGGCTTTAGGGACACGTATTTTTGCTTTCAGATCCTGGATTGCTGCAG
Seq A exon
GTCCTTTTGTTTAGTAAATGCTGTGGGCCAAACTCCAAGGATTCCTTACCCAGGGACTTAATGTAGAAACACAGCACATGCGGTGCGGCACAAAGCATCCG
Seq C2 exon
CCTTTCCGCTGTGCCCATTGCCATTACTCCTGCAACATATCTGGCTCTCTGAAGCGGCACTACAACAGGAAGCACCCTAATGAGGAGTATGCCAACGTGGGCACCGGGGAGCTGGCAGCGGAGGTGCTCATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-13/19=11-15
Average complexity
C3
Mappability confidence:
82%=100=88%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAGAAGAAAAGGCACG
R:
CTGGATGAGCACCTCCGCTG
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains