HsaEX0073076 @ hg19
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:12933]
Coordinates
chr3:125042153-125094198:-
Coord C1 exon
chr3:125093946-125094198
Coord A exon
chr3:125050002-125050082
Coord C2 exon
chr3:125042153-125042288
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTATTTGTGTACTTTTGTAGGAT
3' ss Score
8.96
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGCGACCGCGGCGGCGCTCTAGCTGCGGCATGTCTGCGTCTCTACTGCTCTGGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGGAGAAAGGCGCAGGGGTGGGAGCTGTTGCCGAAGCTGCCACAGCAAAAGTTCTCCCCCCTCCCCCCTTCCCCTCCTCTCAAGGCCCCTAGAAAGGTTGGAGCTGCCGCCGCCTGCAGTCGGTGACCGCGCGACTCGGCGCCCGCCCGCG
Seq A exon
GATAGAGGGAGGAATCAGCAGCTTGGAAATTCAAGCACGTGATCTGGCGGGATGGGCGTTTGCCTAACGTATTTAATGGAG
Seq C2 exon
GAATCGGATGGCATAAGTGATTAAGGTGGTATTGAGGATTTCTGAAGCCTATGAAAGGTAGAAACTCAACCATGATTTCTTTTTCAACTCTACAGCATTCCTTTCCTTGAAGTCTTCGTTTTTACCTTAGTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848-'0-4,'0-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=PU(11.1=66.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAAAGGTTGGAGCTGCCG
R:
AGACTTCAAGGAAAGGAATGCTGT
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)