MmuEX6062058 @ mm10
Exon Skipping
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33380775-33427329:+
Coord C1 exon
chr16:33380775-33381027
Coord A exon
chr16:33421321-33421402
Coord C2 exon
chr16:33427194-33427329
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCATACTTTTACAGGAT
3' ss Score
9.96
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCGACCGCGGCGACGCTCTAGCCGCGCCATGTCTGCCTCTCGACTGCTCTGGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGGAGAAAGGCGCAGGGGTGGGAGCTGTCGCCGGAGCTGCCACAGCAAAAGTTCTCTCCCCTCCCCCTCGCCCTCCTCGTCGGGCCCGTGGGAAGGTCGGAGCCGCCGCCGCCTGCAGTCAGTGACCGCGCGCCTCGGCGCCAGCCCCGCG
Seq A exon
GATAGAAGAGAAGAATCAGTGGTTTGGAAATTTAGCCAAGTGATCTGGCGGGATGGGCTTATACCTGACACATTTTATAGAG
Seq C2 exon
GCATTGGATGGCACAAGTGACTGAGAGGATCCCGAGAGTTTCCGGGGCCTGTGAAAGGTAGAAACTCAACCATGATTTCTTTCTCAACTCAACAGCATTCCCTTCCTTGAAGTCTTCGTTTTTACTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-'0-4,'0-3,17-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGGAAGAGGAGAAAGG
R:
GTCACTTGTGCCATCCAATGC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types