HsaEX0073076 @ hg38
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr3:125323309-125375354:-
Coord C1 exon
chr3:125375102-125375354
Coord A exon
chr3:125331158-125331238
Coord C2 exon
chr3:125323309-125323444
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTATTTGTGTACTTTTGTAGGAT
3' ss Score
8.96
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGCGACCGCGGCGGCGCTCTAGCTGCGGCATGTCTGCGTCTCTACTGCTCTGGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGGAGAAAGGCGCAGGGGTGGGAGCTGTTGCCGAAGCTGCCACAGCAAAAGTTCTCCCCCCTCCCCCCTTCCCCTCCTCTCAAGGCCCCTAGAAAGGTTGGAGCTGCCGCCGCCTGCAGTCGGTGACCGCGCGACTCGGCGCCCGCCCGCG
Seq A exon
GATAGAGGGAGGAATCAGCAGCTTGGAAATTCAAGCACGTGATCTGGCGGGATGGGCGTTTGCCTAACGTATTTAATGGAG
Seq C2 exon
GAATCGGATGGCATAAGTGATTAAGGTGGTATTGAGGATTTCTGAAGCCTATGAAAGGTAGAAACTCAACCATGATTTCTTTTTCAACTCTACAGCATTCCTTTCCTTGAAGTCTTCGTTTTTACCTTAGTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848-'0-8,'0-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=PU(11.1=66.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAAAGGTTGGAGCTGCCG
R:
AGACTTCAAGGAAAGGAATGCTGT
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development