RnoEX0101060 @ rn6
Exon Skipping
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70578150-70618347:-
Coord C1 exon
chr11:70618193-70618347
Coord A exon
chr11:70584974-70585055
Coord C2 exon
chr11:70578150-70578286
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCATACTTTTGCAGGAT
3' ss Score
10
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GGAAGAGGAGAAAGGCGCAGGGGTGGGAGCTGTCGCCGGAGCTGCCACAGCAAAAGTTCTCTCCCCTCCCCCTCGCCCTCCTCGCCGGGCCCGTGGGAAGGTCGGAGCTGCGGCCGTCTGCAGTCAGTGACCGCGCGCCTCGGCGCCAGCCCGCG
Seq A exon
GATAGAAGAGAAGAATCAGTGGCTTGGAAATTTAGCCAAGTGATCTGGCGGGATGGGCTCATGCCTGACACACTTTATAGAG
Seq C2 exon
GCATCGGATGGCACAAGTGACTGAGAGGATCCTGTGAGTTTCTGGAGCCTGTGAAAGGTAGAAACTCAACCATGATTTCTTTCTCAACTCAACAGCATTCCCTTCCTTGAAGTCTTCAGTTTTTACTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789-'1-6,'1-3,13-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGAGAAAGGCGCAGG
R:
TCCTCTCAGTCACTTGTGCCA
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]