HsaEX0073245 @ hg19

Exon Skipping

Gene

ENSG00000198105 | ZNF248

Description

zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]

Coordinates

chr10:38117693-38127039:-

Coord C1 exon

chr10:38126913-38127039

Coord A exon

chr10:38126545-38126640

Coord C2 exon

chr10:38117693-38122044

Length

96 bp

Sequences

Splice sites

3' ss Seq

GTGGTATTTTCTCTTAACAGGGT

3' ss Score

9.47

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GAACAAGTGTCATTCAAGGATGTATGTGTGGACTTCACTCAGGAAGAGTGGTATCTGCTGGACCCTGCTCAGAAGATTCTATACAGAGATGTGATCCTGGAAAATTATAGCAATCTTGTCTCAGTAG

Seq A exon

GGTATTGCATTACTAAACCAGAAGTGATCTTTAAGATCGAGCAAGGAGAAGAGCCCTGGATATTAGAAAAAGGATTCCCAAGCCAGTGCCACCCAG

Seq C2 exon

AAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGGAAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACAGTAAGTGTAGAAAATGGAGATAGAGGAAGCAAAACTTTCAATTTGGGCACAGACCCTGTTTCTTTAAGAAATTATCCCTATAAAATATGTGACTCATGTGAAATGAATTTGAAAAATATTTCGGGCTTAATTATTAGTAAAAAGAACTGTTCCAGAAAGAAGCCTGATGAGTTTAATGTATGTGAGAAATTGCTCCTTGATATTAGGCATGAGAAAATCCCTATTGGAGAGAAGTCTTATAAATATGATCAAAAAAGGAATGCCATTAATTATCACCAGGATCTCAGTCAGCCAAGTTTTGGCCAATCTTTTGAGTATAGTAAAAATGGACAAGGCTTCCATGATGAGGCAGCATTTTTTACAAATAAGAGATCTCAGATAGGAGAGACAGTCTGTAAATATAACGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198105_MULTIEX2-5/5=4-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.053

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

ENSP00000349882