MmuEX6006475 @ mm9

Exon Skipping

Gene

ENSMUSG00000030145 | Zfp248

Description

zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]

Coordinates

chr6:118377337-118383449:-

Coord C1 exon

chr6:118383323-118383449

Coord A exon

chr6:118382875-118382964

Coord C2 exon

chr6:118377337-118380412

Length

90 bp

Sequences

Splice sites

3' ss Seq

GTGTTATTTTGTCTTAACAGGGC

3' ss Score

11.11

5' ss Seq

CAGGTACAG

5' ss Score

8.68

Exon sequences

Seq C1 exon

GAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGTAG

Seq A exon

GGCATTGTGTTACTAAGCCAGATGTAATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAAAATGGATTCCAGTGCCACCCAG

Seq C2 exon

AAAGGAAATGGAAAGTGGACGACCTATTAGAGAGCAACCAGGAAAATCAAGATGGACATTTTTGGCCACTCATGTTCACCAACAAGATCACAAACCTAGAGGGTGGAGGTAACACAAGAGAAACTCCCAGTCCAGACATTGACTCTGTATCTTCAAGAAGTTTTCTGCTCAAAGTATGTGACTCATGTGAAATGAATTTAAAGAATGTTTCAGCTGTAATTATTAGCAAAAAGAACTATTCCAGAAAGAAGCTTAACGAGTTTAATATACATAAGAAACCACTCCCTGACAGTAGGCGTGAGAAGATTCCTGTAGGAATAAAGTCATGTGACTATGATGGGGAAAGGGATGGCGTCCGTCTGTGCCGGGATCTCGCTCGGCCAGTTTCTCATCAGCCTTTTGAGTATAACGAAACAGGACAAGGCTTCTGCGAGGAAGTGGCCCTTTGTACAAGTCAGAACTCTCAGCTAGGGGAGACTCTCTATAAGCACACTGAATGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000030145-'10-12,'10-10,11-12=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.086

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0136815=DHH=WD(100=41.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

ENSMUSP00000068807