MmuEX6006475 @ mm10
Exon Skipping
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118427319-118433431:-
Coord C1 exon
chr6:118433305-118433431
Coord A exon
chr6:118432857-118432946
Coord C2 exon
chr6:118427319-118430394
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTTATTTTGTCTTAACAGGGC
3' ss Score
11.11
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGTAG
Seq A exon
GGCATTGTGTTACTAAGCCAGATGTAATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAAAATGGATTCCAGTGCCACCCAG
Seq C2 exon
AAAGGAAATGGAAAGTGGACGACCTATTAGAGAGCAACCAGGAAAATCAAGATGGACATTTTTGGCCACTCATGTTCACCAACAAGATCACAAACCTAGAGGGTGGAGGTAACACAAGAGAAACTCCCAGTCCAGACATTGACTCTGTATCTTCAAGAAGTTTTCTGCTCAAAGTATGTGACTCATGTGAAATGAATTTAAAGAATGTTTCAGCTGTAATTATTAGCAAAAAGAACTATTCCAGAAAGAAGCTTAACGAGTTTAATATACATAAGAAACCACTCCCTGACAGTAGGCGTGAGAAGATTCCTGTAGGAATAAAGTCATGTGACTATGATGGGGAAAGGGATGGCGTCCGTCTGTGCCGGGATCTCGCTCGGCCAGTTTCTCATCAGCCTTTTGAGTATAACGAAACAGGACAAGGCTTCTGCGAGGAAGTGGCCCTTTGTACAAGTCAGAACTCTCAGCTAGGGGAGACTCTCTATAAGCACACTGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145-'14-13,'14-10,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGTATTTGCTGGACCCT
R:
TGTTGGTGAACATGAGTGGCC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types