RnoEX6014789 @ rn6

Exon Skipping

Gene

ENSRNOG00000037251 | Zfp9

Description

zinc finger protein 9 [Source:RGD Symbol;Acc:2293498]

Coordinates

chr4:150482667-150488344:-

Coord C1 exon

chr4:150488218-150488344

Coord A exon

chr4:150487913-150488002

Coord C2 exon

chr4:150482667-150485712

Length

90 bp

Sequences

Splice sites

3' ss Seq

GTGTTATTTTGTCTTAACAGGGC

3' ss Score

11.11

5' ss Seq

CAGGTACAG

5' ss Score

8.68

Exon sequences

Seq C1 exon

GAGCAAGTGTCATTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCCGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTTGTCTCAGTAG

Seq A exon

GGCATTGTGTTACTAAGCCAGATGTTATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAAAATGGATTCCAATGTCACCCAG

Seq C2 exon

AAAGGAAATGGAAAGTGGATGACCTCTTAGAGAGCAAGCGGGAAAATCAAGATGGACGTTTTTGGCCACTCATGCTCACCAACAAGAACACAGATCTAGAGAGTGGCGGTAACACAAGAAAAACGTCCAGTGCAGACATTGACTCTGTTTCTGCAAGAAGTTTTCTGCTTAAAGTATGTGACTCGTGTGAAATGAATTTAAAGAATCTTTCAGCGGTAATTATTAGCAAAAAGAGCTATTCCAGAAAGAAGCTTACTGAGTTTAATATATATAAGCAAGCACTCCCTGATAGTAGGCCTGAGAAAATTCCTGTAGGAACAGCATCATGTGAATATGATGGGGAAAGGGAGGTCCTCGACCTTTGCCGGAATCTCACTCGGCCAATTTCTGGCCAGCCTTTTGAGTATAGTGAAGCAGGACAAGGCTTCCGTGAGGGAGTGGCTCTTTGTACAAGTCAGAACTCTCAGCTAGGGGAGACTCTCCGTAAGCACACTGAATGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000037251-'5-7,'5-5,6-7=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.076

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

ENSRNOP00000068443