HsaEX0073459 @ hg19
Exon Skipping
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:15809]
Coordinates
chr20:25654851-25677477:-
Coord C1 exon
chr20:25677395-25677477
Coord A exon
chr20:25667027-25667102
Coord C2 exon
chr20:25654851-25657673
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTCTCCTCCCACAGATT
3' ss Score
12.33
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGATCCCTGGGCGTCAGCGAGCCGTGAGATGCGTGGTCCACCATCGGTGACCTCACCGCCTCGGTTCGCCCTCAGCCGCCCCG
Seq A exon
ATTGGCCATCTGCAAGCTTCCCTTCTCCGTGGAGAGCAGGAAGACAGTCATGGGACCTCAGGGAGCCAGGAGACAG
Seq C2 exon
GAATATATGCAGAACATGTCCTGCGGCCCAAGAATCTTGGACTTGCACATCAGAGGCAACAGCAACTACAATTTTCTGATCAAAGCTTCCAGAGTGACACAGCTGAAGGTCAAGAGAAAGAAAAAAGCACTAAGCCCATGGCATTTTCCAGCCCACCCCTAAGACATGCAGTAAGCTCAAGGAGGAGGAACAGTGTAGTGGAAATAGAGTCTAGTCAAGGCCAGAGGGAAAATCCTACAGAAATAGACAAAGTATTGAAAGGAATAGAAAATTCAAGATGGGGAGCATTCAAGTGTGCAGAGCGTGGGCAAGACTTCAGCCGGAAGATGATGGTAATCATACACAAAAAAGCACATTCCAGGCAGAAACTTTTTACATGCAGGGAGTGTCACCAGGGCTTTAGAGATGAGTCAGCATTGCTCTTGCACCAGAACACACACACAGGAGAGAAGTCCTATGTGTGCAGTGTGTGTGGGCGAGGCTTCAGCCTCAAGGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.111 C2=0.131
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF054957=zf-CHY=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF054957=zf-CHY=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=3.9),PF0009621=zf-C2H2=WD(100=3.4),PF054957=zf-CHY=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGAGCCGTGAGATG
R:
CAGCTGTGTCACTCTGGAAGC
Band lengths:
176-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)