HsaINT0186945 @ hg19
Intron Retention
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:15809]
Coordinates
chr20:25666632-25667102:-
Coord C1 exon
chr20:25667027-25667102
Coord A exon
chr20:25666759-25667026
Coord C2 exon
chr20:25666632-25666758
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTGGGTTTTGTGTTACAGGCT
3' ss Score
8.82
Exon sequences
Seq C1 exon
ATTGGCCATCTGCAAGCTTCCCTTCTCCGTGGAGAGCAGGAAGACAGTCATGGGACCTCAGGGAGCCAGGAGACAG
Seq A exon
GTGAGACTTCCCAGAACTGTCGTTCTTGCTGTCACAGGATGGGCCCATTTCCTTCACTGGCCCTAGCAGTTACATTATTAGCACAGGACCAAGGCCAGCACCGCTCCTGGGGAGTGATCTGTCTTTCCTGGCGTCCTCCAGCAGGTGACTGGCCTGTGGGTGTCACTCATCAAGTAGTGATCTGTGTACAGATGGCAGAACCTGGAATCCTCCAACTGCGTGAGTGCAACACTGTCCCTGGTGAGCATGCCTGGGTTTTGTGTTACAG
Seq C2 exon
GCTTTCTTGGCATTTGGGGATGTCACTGTGGATTTCACCCAGAAGGAATGGAGGCTGCTGAGCCCTGCTCAGAGGGCCCTGTACAGGGAGGTGACACTGGAGAACTACAGCCACCTGGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684-ZNF337:NM_015655:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCCATCTGCAAGCTTCC
R:
AGTGAGACCAGGTGGCTGTAG
Band lengths:
201-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)