HsaINT0186945 @ hg38
Intron Retention
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:HGNC:15809]
Coordinates
chr20:25685996-25686957:-
Coord C1 exon
chr20:25686391-25686957
Coord A exon
chr20:25686123-25686390
Coord C2 exon
chr20:25685996-25686122
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTGGGTTTTGTGTTACAGGCT
3' ss Score
8.82
Exon sequences
Seq C1 exon
CACACTCCCCATGCTATTAATTTGTTAAAGGCTTTGGTGTTGTACAGTACTGAATAACTGCCAATGCCATCTGCCTGTGGCCTTCTCAAGTTTGTCTGCACCTGTGGTTATCCTGACTTCAAACCCGGGGAGACAGAGGCTAGAAGAGGCAGACAGCTCTTGTGTATTCTGTCCAGTGCAAAGAACACCTGGAACTCTGAGCCCTAACCTTAAATGCAAGACCTCATCTGCAGGTGTTCCTCATCCTTTTAGCCCCTCAGTGATGTAAGCAACAAACGTCACCCAGCTCCTGGGGCACACTTCACTCCCAGATGAGCTTGTCCTGGATTTGCAGGGAGCCTGGCTCCCTAGACCTTTTGGCCAGATCCCCACAGGGGAATTGTGCAGGTGCGCCCTCCCCAGATCCCCAGTTGGTATTGGAATCACACCAACTGTCACACATGGGGAGGGCAGCTGCACCCAGCCACCCTCTGACTTCTCTCCTCCCACAGATTGGCCATCTGCAAGCTTCCCTTCTCCGTGGAGAGCAGGAAGACAGTCATGGGACCTCAGGGAGCCAGGAGACAG
Seq A exon
GTGAGACTTCCCAGAACTGTCGTTCTTGCTGTCACAGGATGGGCCCATTTCCTTCACTGGCCCTAGCAGTTACATTATTAGCACAGGACCAAGGCCAGCACCGCTCCTGGGGAGTGATCTGTCTTTCCTGGCGTCCTCCAGCAGGTGACTGGCCTGTGGGTGTCACTCATCAAGTAGTGATCTGTGTACAGATGGCAGAACCTGGAATCCTCCAACTGCGTGAGTGCAACACTGTCCCTGGTGAGCATGCCTGGGTTTTGTGTTACAG
Seq C2 exon
GCTTTCTTGGCATTTGGGGATGTCACTGTGGATTTCACCCAGAAGGAATGGAGGCTGCTGAGCCCTGCTCAGAGGGCCCTGTACAGGGAGGTGACACTGGAGAACTACAGCCACCTGGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684:ENST00000376436:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACACTTCACTCCCAGATG
R:
ACAGTGACATCCCCAAATGCC
Band lengths:
303-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains