HsaEX0074452 @ hg38
Exon Skipping
Gene
ENSG00000197608 | ZNF841
Description
zinc finger protein 841 [Source:HGNC Symbol;Acc:HGNC:27611]
Coordinates
chr19:52064466-52077084:-
Coord C1 exon
chr19:52076958-52077084
Coord A exon
chr19:52076044-52076172
Coord C2 exon
chr19:52064466-52067610
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTTTATAAGCAGGAC
3' ss Score
8.03
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGATCTTTGACATTCAGGGATGTGGCTGTAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCTGG
Seq A exon
GACTCTGTCTTCCTGACCTGAATATTATCTCCATGTTGGAGCAAGGGAAAGAGCCCTGGACTGTGGTGAGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCG
Seq C2 exon
GTATCTCTCCTAAATGTGTGATCAAGGAATTACCACCAATACAGAACAGTAACACAGGAGAAAAATTCCAAGCAGTGATGTTGGAAGGACATGAAAGCTATGACACTGAAAATTTTTACTTCAGGGAAATCCGGAAAAATCTACAGGAAGTTGACTTTCAATGGAAAGATGGTGAAATAAATTATAAAGAAGGGCCGATGACCCATAAAAACAATCTTACTGGTCAAAGAGTTCGACATAGTCAAGGGGACGTAGAAAACAAGCATATGGAAAATCAGCTTATATTAAGGTTTCAGTCCGGTCTGGGTGAATTGCAGAAATTTCAAACTGCAGAGAAAATTTATGGATGTAATCAAATTGAGAGGACAGTTAATAATTGTTTTTTAGCTTCACCACTTCAAAGAATTTTTCCTGGTGTCCAAACCAACATTTCTAGGAAATATGGGAATGATTTTTTGCAACTTTCGTTACCTACACAAGACGAGAAAACACATATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197608-'12-19,'12-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=2.8),PF0009621=zf-C2H2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGACGTGATGTTGGAGA
R:
TATGGGTCATCGGCCCTTCTT
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development