HsaEX0074452 @ hg19

Exon Skipping

Gene

ENSG00000197608 | ZNF841

Description

zinc finger protein 841 [Source:HGNC Symbol;Acc:27611]

Coordinates

chr19:52567719-52580337:-

Coord C1 exon

chr19:52580211-52580337

Coord A exon

chr19:52579297-52579425

Coord C2 exon

chr19:52567719-52570863

Length

129 bp

Sequences

Splice sites

3' ss Seq

CTTTCTTTTTTTATAAGCAGGAC

3' ss Score

8.03

5' ss Seq

CCGGTAAGA

5' ss Score

10.1

Exon sequences

Seq C1 exon

GGATCTTTGACATTCAGGGATGTGGCTGTAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCTGG

Seq A exon

GACTCTGTCTTCCTGACCTGAATATTATCTCCATGTTGGAGCAAGGGAAAGAGCCCTGGACTGTGGTGAGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCG

Seq C2 exon

GTATCTCTCCTAAATGTGTGATCAAGGAATTACCACCAATACAGAACAGTAACACAGGAGAAAAATTCCAAGCAGTGATGTTGGAAGGACATGAAAGCTATGACACTGAAAATTTTTACTTCAGGGAAATCCGGAAAAATCTACAGGAAGTTGACTTTCAATGGAAAGATGGTGAAATAAATTATAAAGAAGGGCCGATGACCCATAAAAACAATCTTACTGGTCAAAGAGTTCGACATAGTCAAGGGGACGTAGAAAACAAGCATATGGAAAATCAGCTTATATTAAGGTTTCAGTCCGGTCTGGGTGAATTGCAGAAATTTCAAACTGCAGAGAAAATTTATGGATGTAATCAAATTGAGAGGACAGTTAATAATTGTTTTTTAGCTTCACCACTTCAAAGAATTTTTCCTGGTGTCCAAACCAACATTTCTAGGAAATATGGGAATGATTTTTTGCAACTTTCGTTACCTACACAAGACGAGAAAACACATATTAGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000197608-'2-5,'2-4,3-5

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.059

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=2.5),PF0009621=zf-C2H2=WD(100=2.8),PF0009621=zf-C2H2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.2),PF0184418=HNH=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF0013017=C1_1=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF097235=Zn-ribbon_8=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF054587=Siva=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF0013017=C1_1=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1)

Main Inclusion Isoform:

ENSP00000374185