HsaEX1006429 @ hg38
Exon Skipping
Gene
ENSG00000244731 | C4A
Description
complement C4A (Rodgers blood group) [Source:HGNC Symbol;Acc:HGNC:1323]
Coordinates
chr6:31999487-32001410:+
Coord C1 exon
chr6:31999487-31999561
Coord A exon
chr6:32001053-32001155
Coord C2 exon
chr6:32001321-32001410
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCACGCTTGGCCAGGTC
3' ss Score
6.17
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTGACCTCCCTCTCTGACCGTTACGTGAGTCACTTTGAGACCGAGGGGCCCCACGTCCTGCTGTATTTTGACTCG
Seq A exon
GTCCCCACCTCCCGGGAGTGCGTGGGCTTTGAGGCTGTGCAGGAAGTGCCGGTGGGGCTGGTGCAGCCGGCCAGCGCAACCCTGTACGACTACTACAACCCCG
Seq C2 exon
AGCGCAGATGTTCTGTGTTTTACGGGGCACCAAGTAAGAGCAGACTCTTGGCCACCTTGTGTTCTGCTGAAGTCTGCCAGTGTGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244731_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(26.7=100)
A:
PF076779=A2M_recep=FE(37.8=100)
C2:
PF076779=A2M_recep=PD(7.8=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCCTCTCTGACCGTTA
R:
CTCAGCACACTGGCAGACTTC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains