MmuEX0008588 @ mm10
Exon Skipping
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34810287-34811188:-
Coord C1 exon
chr17:34811114-34811188
Coord A exon
chr17:34810498-34810600
Coord C2 exon
chr17:34810287-34810376
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCATCCTGGGGCCAGGTC
3' ss Score
6.21
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTGACCTCTCTCTCTGACCGTTACGTGAGTCACTTTGAGACTGACGGGCCCCATGTCCTGTTGTACTTTGACTCG
Seq A exon
GTCCCTACCACCCGGGAGTGTGTGGGCTTTGGAGCCTCACAGGAGGTGGTTGTGGGACTGGTGCAGCCAGCCAGCGCTGTCCTGTATGACTACTACAGCCCTG
Seq C2 exon
ATCACAAGTGCTCTGTGTTTTATGCTGCACCCACCAAGAGCCAGCTCCTGGCCACACTGTGCTCTGGAGATGTATGCCAGTGTGCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTCTCTCTCTGACCGT
R:
CGGCACACTGGCATACATCTC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types