HsaEX1009270 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164665847-164692397:-
Coord C1 exon
chr2:164692221-164692397
Coord A exon
chr2:164678768-164678883
Coord C2 exon
chr2:164665847-164665901
Length
116 bp
Sequences
Splice sites
3' ss Seq
GACCATTTTCTTTCCAACAGGCA
3' ss Score
10.94
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GAAAATAACTCTGCACATAATGAACAGAATTCCCAAATACCAACTCCAACTGATGGCCCATCATTCACTGTTATGAGACAAAGTTCTTTAACATTCCAAAGCTCTGACCCAGAACAGATGCGACAGAGTTTGCTGACTGCAATCCGTTCGGGAGAGGCTGCTGCCAAATTGAAAAGG
Seq A exon
GCACTGTGCTGGGTCATAAAGAAACAAAGACAGCTAAGACAATTTTAGTCCTCCAAGAATTATAGACTAGTGATGGTTCATAAAACACGGTCATAAAAGAAAACTATGCTAGAAAC
Seq C2 exon
GATGGATAATGCATCTGTAAACCTGAAACGTACCCATTCTCCTTGAAGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX2-3/6=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAACTCTGCACATAATGAACAGAA
R:
TTGCCTTCAAGGAGAATGGGT
Band lengths:
226-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains