HsaEX1009271 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164665847-164692397:-
Coord C1 exon
chr2:164692221-164692397
Coord A exon
chr2:164675820-164676007
Coord C2 exon
chr2:164665847-164665901
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTTATACAATTATTTTTCAGGTT
3' ss Score
9.92
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAAAATAACTCTGCACATAATGAACAGAATTCCCAAATACCAACTCCAACTGATGGCCCATCATTCACTGTTATGAGACAAAGTTCTTTAACATTCCAAAGCTCTGACCCAGAACAGATGCGACAGAGTTTGCTGACTGCAATCCGTTCGGGAGAGGCTGCTGCCAAATTGAAAAGG
Seq A exon
GTTTCTTTCCTATTTTTATCTTGTCCTTCAACTGCAGTATAGTTCACGGTTGCCTATTTTTAGTGCACTCAAGTACCACACCATGGAAATGCTGTCACAGTTCACCATATAACCACAGCAGTACTGGACCGCACCTTGCTTGGCAGCAGGTGGCCAGTGCTTATGTTATCTGTCTTTCAATTTAAAGG
Seq C2 exon
GATGGATAATGCATCTGTAAACCTGAAACGTACCCATTCTCCTTGAAGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX2-4/6=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAACTCTGCACATAATGAACAGAA
R:
TTGCCTTCAAGGAGAATGGGT
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains