HsaEX1011785 @ hg38
Exon Skipping
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122630288-122631875:+
Coord C1 exon
chr10:122630288-122630490
Coord A exon
chr10:122630961-122631281
Coord C2 exon
chr10:122631855-122631875
Length
321 bp
Sequences
Splice sites
3' ss Seq
TCAGTTAATGTGTCTTTCAGATG
3' ss Score
8.51
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTGGAGGCACACCATAACTGCAGTTTTGATTATGTTGAAATCTTTGATGGATCATTGAATAGCAGTCTCCTGCTGGGGAAAATCTGTAATGATACCAGGCAAATATTTACATCTTCTTACAACCGAATGACCATTCACTTTCGAAGTGACATCAGTTTCCAAAACACTGGCTTTTTGGCTTGGTATAACTCCTTCCCAAGCG
Seq A exon
ATGCCACCTTGAGGTTGGTCAATTTAAATTCATCCTATGGTCTATGTGCCGGGCGTGTAGAAATTTACCATGGTGGCACCTGGGGGACAGTTTGTGATGACTCCTGGACCATTCAGGAAGCTGAGGTGGTCTGCAGACAGCTAGGGTGTGGACGTGCAGTTTCAGCCCTTGGAAATGCATATTTTGGCTCTGGCTCTGGCCCCATCACCCTGGACGATGTAGAGTGCTCAGGGACGGAATCCACTCTCTGGCAGTGCCGGAACCGAGGCTGGTTCTCCCACAACTGTAATCATCGTGAAGATGCTGGTGTCATCTGCTCAG
Seq C2 exon
GAAACCATCTATCGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-'58-53,'58-52,59-53
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.9=89.9)
A:
PF0053013=SRCR=WD(100=90.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains