HsaEX1032633 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52253937-52279905:-
Coord C1 exon
chr13:52279841-52279905
Coord A exon
chr13:52258529-52258590
Coord C2 exon
chr13:52253937-52254018
Length
62 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTTCTCTTTTTTAGGAA
3' ss Score
13.57
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
AACATATTGTCGCTATGTCGTTTCCATCTTCGGGAGGCCAGTCTTTCTATCGGAATCCAATTAAG
Seq A exon
GAAGTCATACAGTTTCTAGACAAAGAAACATCCAAACCACTATCGAGTCTACAATCTATGCA
Seq C2 exon
GTGAAAGAGCTTATGATCCTAAGCACTTCCATAATAGGGTCAGTAGAATCATGATCGATGATCATAATGTCCCCACTCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'6-9,'6-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGTTTCCATCTTCGGGAG
R:
CGTAGAGTGGGGACATTATGATCA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains