HsaEX1034474 @ hg38
Exon Skipping
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14179362-14184102:+
Coord C1 exon
chr18:14179362-14179597
Coord A exon
chr18:14183652-14183766
Coord C2 exon
chr18:14183929-14184102
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGTCCTGTTACTCTCGTAGAAC
3' ss Score
5.19
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
AGCCGGTAGTTGGGAGTCTGAGAAGTCACCACCATGAAGTTGTTCGGCTTCAGGAGCCGCAGGGGCCAGACGGTCCTGGGCTCCATAGACCACCTCTACACGGGTTCCGGGTACCGAATCCGGTACTCGGAACTGCAGAAGATCCACAAGGCAGCTGTCAAGGGCGACGCTGCGGAGATGGAGCGCTGTCTGGCGCGCAGGAGCGGAGACCTTGACGCCCTGGACAAGCAGCACAG
Seq A exon
AACTGCTCTACATTTGGCCTGTGCCAGTGGCCATGTGAAAGTGGTCACTCTCCTGGTTAACAGAAAATGCCAGATTGATATCTATGACAAAGAAAATAGAACGCCTTTGATACAG
Seq C2 exon
GCTGTCCATTGCCAGGAAGAGGCTTGTGCCGTTATTCTGCTGGAACATGGTGCCAATCCAAACCTTAAGGATATCTACGGCAACACTGCTCTCCATTATGCTGTGTATAGTGAGAGCACCTCACTGGCAGAAAAACTGCTTTTCCATGGTGAAAATATTGAAGCACTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACTCGGAACTGCAGAAG
R:
TTTTCTGCCAGTGAGGTGCTC
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains