HsaEX1044722 @ hg38
Exon Skipping
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr7:100015572-100024307:+
Coord C1 exon
chr7:100015572-100015726
Coord A exon
chr7:100023419-100023932
Coord C2 exon
chr7:100024154-100024307
Length
514 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTATACTTCAGGAA
3' ss Score
9.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTGGTGACACGCTTCCGGCCTTTGTGACTCATTGTGTCTGTGTCGAGGCGTCGGGAGGGCCTAAGTCCGTGTGCGGTGCCCTTCGGCCGGCCTGAGCCCCAGAGTCAGCTCCCCTTTCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCTCACG
Seq A exon
GAATAGTAAAGAAACACATCATAAAACCTCCCAGGACATAAAGGTGAGCACAGACCCTGTTTGGATCAAGTCAGTTCCTGGAGCCTGAATGATGACTGCTGAATCACGGGAAGCCACGGGTCTGTCCCCACAGGCTGCACAGGAGAAGGATGGTATCGTAATAGTGAAGGTGGAAGAGGAAGATGAGGAAGACCACATGTGGGGGCAGGATTCCACCCTACAGGACACGCCTCCTCCAGACCCAGAGATATTCCGCCAACGCTTCAGGCGCTTCTGTTACCAGAACACTTTTGGGCCCCGAGAGGCTCTCAGTCGGCTGAAGGAACTTTGTCATCAGTGGCTGCGGCCAGAAATAAACACCAAGGAACAGATCCTGGAGCTTCTGGTGCTAGAGCAGTTTCTTTCCATCCTGCCCAAGGAGCTCCAGGTCTGGCTGCAGGAATACCGCCCCGATAGTGGAGAGGAGGCCGTGACCCTTCTAGAAGACTTGGAGCTTGATTTATCAGGACAACAG
Seq C2 exon
GTCCCAGGTCAAGTTCATGGACCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTTCAGGAGTCCTCGAGCTTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACATTCGTCTCGGAAACCCCGCCTCTTACAGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261-'0-16,'0-11,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.295 C2=0.849
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=64.8)
C2:
PF0202312=SCAN=PD(1.1=1.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGCTTCCGGCCTTTG
R:
CTCGTGACTGTAAGAGGCGGG
Band lengths:
303-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains