MmuEX6021944 @ mm10
Exon Skipping
Gene
ENSMUSG00000029729 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:MGI Symbol;Acc:MGI:1921820]
Coordinates
chr5:138085084-138107822:+
Coord C1 exon
chr5:138085084-138085231
Coord A exon
chr5:138092920-138093432
Coord C2 exon
chr5:138100590-138107822
Length
513 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCCTTAACTTCAGGAA
3' ss Score
9.31
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GACCTACTTCCGGTCTTTGTGACTCATTGTGCCTGTGGCGAGGTATTGGGAGGGCCTATGTCGGTGTGCAGTGCCCTTCGGTCGGGTTGAACCCAGAGCAAGCTGTGCTTGGTCGCCCGGCGTCCCCAGGCCGCTCCGGAGACTCACG
Seq A exon
GAATAGTGGAGGAACCAATAGAAGACAGCTGCTAGGACAGAAACTGCAGCCTGACCCTGTTGGACCCCACCAGTTCACTGAGCCTGAATGATGACTGCTGAGTCAAGGGAAACCACAGGTCTATCCCCACAGGCTGCACAGGAGAAAGATGGTATAGTTATTGTGAAGGTAGAAGAAGAAGATGAAGAAGACCACATGTGGGGGCAGGACTCTAGCCTGCAGGAGACACCACCACCCGACCCAGAGGTATTCCGCCAACGGTTCAGGCGCTTCTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTTTGAATCGACTAAAGGAACTTTGTCATCAGTGGCTCCGACCAGAAGTCAACAGCAAGGAACAGATCTTGGAGCTGTTGGTACTGGAGCAGTTCCTGTCCATCCTGCCCAAAGAGCTGCAAGTCTGGCTGCAGGAGTACCGGCCTGACAGTGGGGAAGAGGCCGTGACTCTTCTAGAAGACTTGGAACTTGATCTATCGGGACAGCAG
Seq C2 exon
GCTCTGAGAACAGGAATGGGAATGAGTCAACCTCAAAGGCTGAAGTCAAAGAAGATTCCACCTCACATGGGGAGATAGCAGGGAGATTCCAGAAGGAATTTGGAGAGAAACGGGAACAGCAGGGCAGAGTAGTCGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCAAAGAAAAGAAAGAGCCTGGGCCACCTACAGCCAAGGAAAAAAAGCCCAGCACAGGAGAGCGGGGCCCGCGGGAGAAGGGTAAAGGTCTGGGGAGAAGCTTTAGCCTGAGCGCAAACTTTAATAACACCCCAGAGGAGGCTCCGTCGGGAGCAAAGACTCACAGATGCGATGAGTGTGGGAAATGTTTCACAAGAAGCTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATGTAACGAGTGTGGCAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTTCATCAGCGAATCCACACGGGAGAGAAACCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029729_MULTIEX1-1/5=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.330 C2=0.397
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=64.8)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACCCAGAGCAAGCTGTG
R:
CGCTCAGGCTAAAGCTTCTCC
Band lengths:
344-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types