RnoEX6063724 @ rn6
Exon Skipping
Gene
ENSRNOG00000001335 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol;Acc:1560616]
Coordinates
chr12:19231092-19239204:+
Coord C1 exon
chr12:19231092-19231202
Coord A exon
chr12:19238150-19238649
Coord C2 exon
chr12:19239054-19239204
Length
500 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTAACTTTAGGAA
3' ss Score
11.2
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGAGGTGTTGGGAGGGCCTAGGTCGGTGTGCAGTGCCCTTCGGCCGGGTTGAACCTGGGAGTCAGCCGTGCTTGGTCGCCCGGCGTCCCCAGGCCGCTCCGGAGACTCACG
Seq A exon
GAACAGTGCAGAAACCAATAGAAGATAGTTGCTAGGACAGAAACTGCAGCCTGACCCTGTTGGACTCCACCTAAATGATGACTGCTGAGTCAAGGGAAGCCACGGGTCTATCCCCACAGGCTGCACAGGAGAAAGATGGTATAGTCATTGTGAAGGTAGAAGAAGAAGACGAGGAAGACCACATGTGGGGGCAGGACGCTAGCCTTCAGGAGACGCCACCACCCGACCCAGAGGTGTTCCGCCAACGGTTCAGGCGCTTCTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTCTAAATCGACTAAAGGAACTTTGTCATCAGTGGCTTCGACCAGAAGTCAACACCAAGGAACAGATCTTGGAGCTGTTGGTACTGGAGCAGTTCCTGTCCATCCTGCCCAAAGAGCTGCAAGTGTGGCTGCAGGAGTACCGGCCTGACAGTGGAGAAGAGGCCGTGACTCTTCTGGAAGACTTGGAACTTGATCTGTCAGGACAGCAG
Seq C2 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGGGGTGTGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCTTCGACCATCATGAAGCTGCCCAGTCTCATTTCAAGCATTCGTCTAGAAAGCCTCGTCTCTTATCACCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001335-'1-4,'1-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.310 C2=0.843
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=64.8)
C2:
PF0202312=SCAN=PD(1.1=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTGTTGGGAGGGCC
R:
CTCGGGGTGATAAGAGACGAG
Band lengths:
262-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]