MmuEX6021944 @ mm9
Exon Skipping
Gene
ENSMUSG00000029729 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:MGI Symbol;Acc:MGI:1921820]
Coordinates
chr5:138526312-138535367:+
Coord C1 exon
chr5:138526312-138526459
Coord A exon
chr5:138534148-138534660
Coord C2 exon
chr5:138535220-138535367
Length
513 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCCTTAACTTCAGGAA
3' ss Score
9.31
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GACCTACTTCCGGTCTTTGTGACTCATTGTGCCTGTGGCGAGGTATTGGGAGGGCCTATGTCGGTGTGCAGTGCCCTTCGGTCGGGTTGAACCCAGAGCAAGCTGTGCTTGGTCGCCCGGCGTCCCCAGGCCGCTCCGGAGACTCACG
Seq A exon
GAATAGTGGAGGAACCAATAGAAGACAGCTGCTAGGACAGAAACTGCAGCCTGACCCTGTTGGACCCCACCAGTTCACTGAGCCTGAATGATGACTGCTGAGTCAAGGGAAACCACAGGTCTATCCCCACAGGCTGCACAGGAGAAAGATGGTATAGTTATTGTGAAGGTAGAAGAAGAAGATGAAGAAGACCACATGTGGGGGCAGGACTCTAGCCTGCAGGAGACACCACCACCCGACCCAGAGGTATTCCGCCAACGGTTCAGGCGCTTCTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTTTGAATCGACTAAAGGAACTTTGTCATCAGTGGCTCCGACCAGAAGTCAACAGCAAGGAACAGATCTTGGAGCTGTTGGTACTGGAGCAGTTCCTGTCCATCCTGCCCAAAGAGCTGCAAGTCTGGCTGCAGGAGTACCGGCCTGACAGTGGGGAAGAGGCCGTGACTCTTCTAGAAGACTTGGAACTTGATCTATCGGGACAGCAG
Seq C2 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGGGGTGTGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCTTTGACCATCATGAAACTGCCCAGTCTCATTTCAAGCATTCATCTAGGAAGCCTCGTCTCTTATCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029729-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.332 C2=0.876
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=64.8)
C2:
PF0202312=SCAN=PD(1.1=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACTTCCGGTCTTTGTGAC
R:
CTCGGGATAAGAGACGAGGCT
Band lengths:
295-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: