HsaEX6000339 @ hg19
Exon Skipping
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1244346-1247596:+
Coord C1 exon
chr11:1244346-1244423
Coord A exon
chr11:1246911-1246967
Coord C2 exon
chr11:1247435-1247596
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCCATTCCCTCTTCCCACAGAGA
3' ss Score
11.53
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCCCAGGATGGGTGCCCCGAGCGCGTGCCGGACGCTGGTGTTGGCTCTGGCGGCCATGCTCGTGGTGCCGCAGGCAG
Seq A exon
AGACCCAGGGCCCTGTGGAGCCGAGCTGGGAGAATGCAGGGCACACCATGGATGGCG
Seq C2 exon
GTGCCCCGACGTCCTCGCCCACCCGGCGCGTGAGCTTTGTTCCACCCGTCACTGTCTTCCCCAGCCTGAGCCGTAAGCAGATGCTGCCCCTGCCAGCCGGGAAGGGGGTGTTTGCCAGTCCCAAAGGTGGGGGCCCAGATCTAGGGGTGCAGCTGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.883 C2=0.335
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCTGGTGTTGGCTC
R:
GCATCTGCTTACGGCTCAGG
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)