MmuEX0030203 @ mm10
Exon Skipping
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:141839070-141841848:+
Coord C1 exon
chr7:141839070-141839186
Coord A exon
chr7:141841329-141841400
Coord C2 exon
chr7:141841780-141841848
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCCTTTTCCTGCAGAGA
3' ss Score
11.83
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
GTGCCTTGTCTCAGTCCCTCCTGCCTGCCCTCTGTACTGCCCCCAGGATGGGCAGCAGAAACTGGAGCTGGGCTCTGGTCTGGGCCTCCGTGGCCTTGCTCATGGTGTGGCCAGCAG
Seq A exon
AGAGCCAGGGTCAGGCAGAGCTGAGCTCAGAACATCTAGAACTCACCGGAGACAGTCAGAGAGTGTATAGTG
Seq C2 exon
ACTCCATATCCTCATCCACAAGGCATGTCACCTTCATCCCACCTATCACTGTCTTCCCTAGCATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCTCAGTCCCTCCTGCC
R:
CGCTCATGCTAGGGAAGACAG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types