HsaEX6000339 @ hg38
Exon Skipping
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1223066-1226276:+
Coord C1 exon
chr11:1223066-1223193
Coord A exon
chr11:1225681-1225737
Coord C2 exon
chr11:1226205-1226276
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCCATTCCCTCTTCCCACAGAGA
3' ss Score
11.53
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACCCGGCCCGGCTCCCTCCCTGCCCGTCCCCGTCCCCCCACCCGTGCCAGCCCCCAGGATGGGTGCCCCGAGCGCGTGCCGGACGCTGGTGTTGGCTCTGGCGGCCATGCTCGTGGTGCCGCAGGCAG
Seq A exon
AGACCCAGGGCCCTGTGGAGCCGAGCTGGGAGAATGCAGGGCACACCATGGATGGCG
Seq C2 exon
GTGCCCCGACGTCCTCGCCCACCCGGCGCGTGAGCTTTGTTCCACCCGTCACTGTCTTCCCCAGCCTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.850 C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGGTGTTGGCTCTG
R:
CTCAGGCTGGGGAAGACAGT
Band lengths:
117-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains