RnoEX0056642 @ rn6
Exon Skipping
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214778496-214781207:+
Coord C1 exon
chr1:214778496-214778565
Coord A exon
chr1:214780715-214780786
Coord C2 exon
chr1:214781139-214781207
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCCCTTTCCTGCAGAGA
3' ss Score
11.68
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATGGGCGGCAGGAATTGGAGCTGGGCTCTGGTCTGGGCTTCTGTGGCCTTGCTCATGGTGTGGCCAGCAG
Seq A exon
AGAGCCAGGGCCAGGAAGAGCTGAGCGCAGAACATCCAGAACTCACCGGAGACAGTCAGAAAGTGTATAGTG
Seq C2 exon
CCCCCACATCCTCATCCGCACGGCATGTCACCTTCATCCCACCTATCTCTGTCTTCCCAAGCATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCAGGAATTGGAGCTG
R:
CACTTATGCTTGGGAAGACAGAGA
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]