HsaEX6001083 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17612997-17615303:+
Coord C1 exon
chr11:17612997-17613135
Coord A exon
chr11:17614740-17614874
Coord C2 exon
chr11:17615157-17615303
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTCACTTATTCTCTCCTCAGAGC
3' ss Score
10.52
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
TGTGTGCCAGCGGGGCTCATTCCAGTGCACCCTGCACCCTTGCGCCTCCACCTGCACTGCCTATGGGGACCGGCATTACCGCACGTTTGATGGGCTCCCGTTTGACTTCGTGGGGGCATGCAAAGTGCACCTGGTCAAG
Seq A exon
AGCACATCAGATGTCAGCTTCTCTGTGATTGTAGAGAATGTGAACTGCTACAGCTCTGGCATGATCTGCAGGAAATTTATTTCCATCAACGTTGGGAACTCACTCATTGTCTTTGATGATGACTCCGGAAATCCT
Seq C2 exon
AGTCCAGAGAGCTTCCTGGATGACAAGCAGGAGGTCCACACATGGCGAGTGGGATTTTTCACACTGGTGCATTTCCCACAGGAGCACATCACCCTCTTGTGGGACCAGAGAACCACAGTGCACGTCCAGGCTGGGCCTCAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(36.4=100)
C2:
PF0009420=VWD=FE(39.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTCCAGTGCACCCTGC
R:
GTGCACTGTGGTTCTCTGGTC
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)