MmuEX6010893 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46271239-46274229:+
Coord C1 exon
chr7:46271239-46271377
Coord A exon
chr7:46273706-46273840
Coord C2 exon
chr7:46274083-46274229
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTCTTTTTTCCTCAGAGT
3' ss Score
10.17
5' ss Seq
CCCGTAAGG
5' ss Score
5.46
Exon sequences
Seq C1 exon
TGTGTGCCAGCGGGGCTCGTTCCAGTGCACCCTGCACCCCTGCGCCTCCACCTGTACCGCCTATGGGGACCGACACTATCGCACATTTGACGGGCTTCCGTATGACTTTGTAGGGGCGTGCAAAGTGCACCTGGTCAAG
Seq A exon
AGTACATCCGAGCTCAGCTTCTCTGTCATGGTGGAGGATGTGAACTGCTATGGCTCCGGCGTCATCTGCAGGAAGTCCATCTCCATCAACGTTGGCAGCTCACTCATCATCTTTGATGACGACTCCGGGGATCCC
Seq C2 exon
AGTCCCGAGAGCTTCCTGGATGAGAAGCAGGCTGTCCACATCTGGAGAGCAGGCTTTTTCACACTGGTGCATTTCCCACGGGAACACATCACCCTCTTGTGGGACCAGAGAACCACTGTGCATGTCCAGGCGGGCCCTCAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'15-35,'15-24,26-35=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(29.9=100)
C2:
PF0009420=VWD=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTTCCAGTGCACCCTG
R:
CATGCACAGTGGTTCTCTGGT
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types