BtaEX6058902 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35459253-35461912:-
Coord C1 exon
chr15:35461774-35461912
Coord A exon
chr15:35459692-35459826
Coord C2 exon
chr15:35459253-35459399
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTAACTTATTTCTCCCCAGAGC
3' ss Score
8.03
5' ss Seq
CCCGTAAGG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CGTGTGCCAGCGCGGCTCGTTCCAGTGCACCCTCCACCCCTGTGCCTCCACCTGCACAGCCTATGGTGACCGGCATTACCGCACGTTTGATGGGCTCCCATTTGACTTCGTGGGGGCGTGCAAAGTGCACCTGGTCAAG
Seq A exon
AGCACATCGGATTTCAGCTTCTCTGTGATTGTAGAAAATGTAAACTGCTACAGCTCTGGCATCATCTGCAGGAAATTTATTTCCATCAACGTGGGGAACTCACTCATTATCTTCGATGACGACTCAGGAAATCCC
Seq C2 exon
AGCCCGGAGAGCTTCCTGGACGAGAAGCAGCAGGTCCACACATGGCGGGCAGGGTTTTTCACGCTGGTGCATTTCCCACGGGAGCACATCACGCTCTTATGGGACCAGAGAACCACAGTGCACGTCCAGGCTGGGCCACAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'28-29,'28-28,29-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(29.9=100)
C2:
PF0009420=VWD=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGTGCACCCTCCAC
R:
GTGCACTGTGGTTCTCTGGTC
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]