DreEX0052876 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6061503-6068134:+
Coord C1 exon
chr18:6061503-6061641
Coord A exon
chr18:6065156-6065290
Coord C2 exon
chr18:6067988-6068134
Length
135 bp
Sequences
Splice sites
3' ss Seq
AATCTTGTGTCCACATGTAGAGT
3' ss Score
5.55
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TGTTTGTCATCGTGGATTCTTCAACTGCACATACTACCCATGTCCAGCAGTGTGTACCGTATACAGTGACCGTCATTACCACACATTTGATGGCCTGGAGTATGATTATGTGAGCGACTGCCAGGTCAACCTGGTCAAG
Seq A exon
AGTGTTGGTGATACAGAGGTTTCCATCATGGCTCAAAATAAAGATTGCTATGAAAGTGGGATCGTTTGCATGAAGTACCTGCTCATCTACGTTGGCCTCACCAAAATCTACTTCAGTGATAACTCTGGTAAACCT
Seq C2 exon
AGCTCCTCCACTGTTGTGGGCAGAGGTTATGAGTTTCAGCTGTGGGGTGCGGGATATTACACCGTGGTCCACTTTCCTGCTCAAGATCTGACCGTTTTGTGGGACCGTAAGACAACTGTCCATATTCGTGCTGGACCCCAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'23-23,'23-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(30.6=100)
C2:
PF0009420=VWD=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCCAGCAGTGTGTACC
R:
CTGGGGTCCAGCACGAATATG
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]