GgaEX6001416 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39725528-39738437:+
Coord C1 exon
chr1:39725528-39725666
Coord A exon
chr1:39737684-39737818
Coord C2 exon
chr1:39738291-39738437
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTTTGTGTTGCAGAGC
3' ss Score
10.74
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTTGTCGGAGAGGGGTATTCAATTGCACTAGTTACCCCTGTCCTGCTGTATGCACGATTTATGGAGATCGACATTATTATACCTTTGATGGCCTGGAGTATGATTACGCCAGTGACTGCCAAGCTTACCTGCTAAAG
Seq A exon
AGCACAGATAACTCAAATATATCTGTAATTGCTCAGAACAAAAAGTGCTTTGATAATGATATTGTTTGCTCGAAGAATATTTTCATTGCTGTTGGAGACTCTGAGATTTATTTTAGTGAACTTTCTGAGAAGCAG
Seq C2 exon
GGTACCTTGAGAGGACAGGAAAACAAATCTAACTATCAGGTTTGGATGGCCGGATATTATACTGTGATACACTTTCCGGAACAGGATATTACAATTCTATGGGATAAGAAGACCATGATGCATGTTAAAGTTGGACCTCAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(19.0=59.6)
A:
PF0009420=VWD=FE(29.9=100)
C2:
PF0009420=VWD=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCTGTCCTGCTGTATGC
R:
TGAGGTCCAACTTTAACATGCA
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]