RnoEX6031479 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51842106-51879893:+
Coord C1 exon
chr7:51842106-51842244
Coord A exon
chr7:51868442-51868576
Coord C2 exon
chr7:51879744-51879893
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTGACATATTTCAGAGT
3' ss Score
6.81
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTTGTCGGCGAGGGATGTTCAACTGCACGTATTATCCGTGTCCCGCAGTGTGCACCGTCTATGGGGACCGGCATTACCATTCCTTTGATGGCTTGGAATATGACTATATCAGCGACTGCCAGGTGTTCTTGATAAAG
Seq A exon
AGTACAGATGATTCTGGTATATCTGTGATTTCCCAGAACAAGAAGTGCTTTGACAATGATATTGTTTGTTCTAAAAGTGTTTTGATATCAATTGGAGACACTGAAATCTACCTCAACGATGCTCCTTACAAACAG
Seq C2 exon
AAGCAATCAGGTTTTTTCCTGGAAAGCAAACCTGAATACCAGCTGTGGAAGGCTGGGTTCTACATAGTAATATACTTCCCAGAGGAAGATATCACCATTCTGTGGGATGAGAAGACAACCATCCACATCAAAGTTGGGCCAAAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'30-34,'30-33,32-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATTATCCGTGTCCCGCAG
R:
TTGGCCCAACTTTGATGTGGA
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]