HsaEX0009265 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80279028-80302783:+
Coord C1 exon
chr12:80279028-80279166
Coord A exon
chr12:80296827-80296961
Coord C2 exon
chr12:80302634-80302783
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAATATTTGTGACATTTCAGAGT
3' ss Score
4.44
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAGTGTGCACAATATACGGGGACCGACATTATTATTCTTTTGATGGACTAGAATATGACTATATCAGTGATTGCCAGGTGTTTTTGATAAAG
Seq A exon
AGTGCAGATGATTCAGATATATCTGTCATTGCCCAGAACAAGAAATGCTTTGACAACGATATTGTTTGTTCTAAAAGTGTTTTGATTTCAGTTGGGGACACTGAAATTTACCTGAATGATACTCCTTACAAACAG
Seq C2 exon
AAACAATCAGGTTTTTTTCTGGAAAACAAATCTACCTACCAGCTTTGGAAGGCTGGTTACTATATAGTAGTATACTTTCCAGAGAAAGATATCACTATTCTTTGGGATAGGAAGACAACTATTCATATCAAAGTTGGGCCACAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCATGCCCAGCAGTGTG
R:
CTTCCACTGTGGCCCAACTTT
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development