HsaEX0009265 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80672808-80696563:+
Coord C1 exon
chr12:80672808-80672946
Coord A exon
chr12:80690607-80690741
Coord C2 exon
chr12:80696414-80696563
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAATATTTGTGACATTTCAGAGT
3' ss Score
4.44
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAGTGTGCACAATATACGGGGACCGACATTATTATTCTTTTGATGGACTAGAATATGACTATATCAGTGATTGCCAGGTGTTTTTGATAAAG
Seq A exon
AGTGCAGATGATTCAGATATATCTGTCATTGCCCAGAACAAGAAATGCTTTGACAACGATATTGTTTGTTCTAAAAGTGTTTTGATTTCAGTTGGGGACACTGAAATTTACCTGAATGATACTCCTTACAAACAG
Seq C2 exon
AAACAATCAGGTTTTTTTCTGGAAAACAAATCTACCTACCAGCTTTGGAAGGCTGGTTACTATATAGTAGTATACTTTCCAGAGAAAGATATCACTATTCTTTGGGATAGGAAGACAACTATTCATATCAAAGTTGGGCCACAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCATGCCCAGCAGTGTG
R:
CTTCCACTGTGGCCCAACTTT
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)