MmuEX0021161 @ mm10
Exon Skipping
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107821882-107853405:-
Coord C1 exon
chr10:107853267-107853405
Coord A exon
chr10:107827673-107827807
Coord C2 exon
chr10:107821882-107822031
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATATTCTTGACCTATTTCAGAGT
3' ss Score
7.6
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTTGTCGGCGGGGGATGTTCAATTGCACATATTATCCATGTCCTGCAGTATGCACAGTATATGGGGACCGGCATTATCACTCCTTTGATGGATTGGAATATGACTATATCAGCGATTGCCAAGTGTTTTTGATAAAG
Seq A exon
AGTACAGACGATTCTGATATATCTGTGATTTCCCAAAACAAGAAATGCTTTGACAATGATATTGTTTGTTCTAAAAGTGTTTTGATATCAATTGGAGACACTGAAATATACCTCAATGATGCTCCTTACAAACAG
Seq C2 exon
AAGCGATCAGGGTTTTTCCTGGAAAGCAGACCTGAGTACCAGCTCTGGAAGGCTGGGTTCTACATAGTAATATACTTCCCGGAGGAAGATATCACCATTCTGTGGGATGAGAAGACAACCATCCACATCAAAGTCGGGCCACAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'29-28,'29-27,30-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(18.9=59.6)
A:
PF0009420=VWD=FE(29.7=100)
C2:
PF0009420=VWD=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGATGTTCAATTGCACA
R:
TGGTTGTCTTCTCATCCCACAG
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types